Cacaoculture intensification has led to a reduction of the forest area and a continuous decline of woody trees number in cocoa plantations. In the context of climate change, Côte d’Ivoire, the world’s largest producer of cocoa beans, has opted for agroforestry practices to ensure sustainable cocoa production. However, the impact of this choice on cocoa production is not evaluated, let alone the characteristics of existing agroforestry systems. Our objective is to study the effect of different types of agroforestry systems on cocoa yield. Data on flora, DBH diameter, total height of the trees as well as on cocoa pod were collected in 60 plots of 400 m2 each. In addition, tree shading, and potential yield were calculated. The results showed that the diversity of agroforestry systems with cocoa trees includes 47 plant species distributed between 41 genera and 20 families. Factorial Multiple Analysis based on associated tree diversity, dimensions and shading has identified three types of agroforestry systems. Light shading systems had the highest cocoa yields (> 1000 kg/ha/year) while the yield with a dense shading varied from 500 to 1000 kg/ha/year. The absence of shading has a negative effect leading to less than 500 kg/ha/year. These results could help promote efficient Cocoa Agroforestry Systems.